Genomic evidence of genetic variation with pleiotropic effects on caterpillar fitness and plant traits in a model legume

Plant–insect interactions are ubiquitous, and have been studied intensely because of their relevance to damage and pollination in agricultural plants, and to the ecology and evolution of biodiversity. Variation within species can affect the outcome of these interactions. Specific genes and chemicals that mediate these interactions have been identified, but genome‐ or metabolome‐scale studies might be necessary to better understand the ecological and evolutionary consequences of intraspecific variation for plant–insect interactions. Here, we present such a study. Specifically, we assess the consequences of genome‐wide genetic variation in the model plant Medicago truncatula for Lycaeides melissa caterpillar growth and survival (larval performance). Using a rearing experiment and a whole‐genome SNP data set (>5 million SNPs), we found that polygenic variation in M. truncatula explains 9%–41% of the observed variation in caterpillar growth and survival. Genetic correlations among caterpillar performance and other plant traits, including structural defences and some anonymous chemical features, suggest that multiple M. truncatula alleles have pleiotropic effects on plant traits and caterpillar performance (or that substantial linkage disequilibrium exists among distinct loci affecting subsets of these traits). A moderate proportion of the genetic effect of M. truncatula alleles on L. melissa performance can be explained by the effect of these alleles on the plant traits we measured, especially leaf toughness. Taken together, our results show that intraspecific genetic variation in M. truncatula has a substantial effect on the successful development of L. melissa caterpillars (i.e., on a plant–insect interaction), and further point toward traits potentially mediating this genetic effect.     

樟树(Cinnamomum camphora)幼苗细根形态对氮磷添加和幼苗密度的响应

全球氮沉降对森林生态系统结构和功能的影响已成为现代生态学研究热点之一,我国华南地区氮沉降的增长引起了土壤酸化和磷限制加剧等一系列生态问题。密度制约着植物个体对环境资源的吸收利用,是自然界中十分重要的选择压力之一。因此研究樟树(Cinnamomum camphora)幼苗的细根形态对氮磷添加和密度的响应,有利于了解亚热带树木根系对氮沉降和磷添加与林分密度的响应过程和机制,并为全球变化背景下樟树林生态系统的管理提供依据。本研究以1年生樟树幼苗为试验材料,选择氯化铵(NH_4Cl)作为氮肥以模拟大气氮沉降,并且以二水合磷酸二氢钠(NaH_2PO_4·2H_2O)模拟磷添加,氮磷处理设置4个水平,即对照、施N、施P和施N+P;种植密度设置10、20、40和80株/m~2 4个水平。测定各处理樟树幼苗细根的根长、表面积、体积和根尖数,分析氮磷添加、密度和两者交互作用对樟树幼苗细根的影响。研究结果表明,与对照处理相比,N、P和N+P处理促进了幼苗细根长度、表面积、体积以及根尖数的增加。低密度条件下的N添加对幼苗根系形态的促进效果强于P添加。N+P处理对10、20、40株/m~2幼苗根系形态的促进效果最佳,而各处理对80株/m~2幼苗根系形态的促进效果均无显著性差异。随着种植密度的增大,幼苗细根长度、表面积、体积和根尖数均减少。樟树幼苗的细根长度、表面积、体积和根尖数在各密度间和不同氮磷添加处理间均有显著性差异,密度和氮磷处理间的交互作用对根系形态各指标均无显著影响。     

不同密度樟树(Cinnamomum camphora)幼苗生长和叶片性状对氮磷添加的响应

人类活动改变了氮素从大气向陆地生态系统输入的方式和速率,进而导致森林生态系统养分变化和失衡。研究氮磷添加对不同密度樟树(Cinnamomum camphora)幼苗生长和叶片性状的影响,可以为全球氮磷沉降背景下亚热带地区樟树人工林的经营管理提供依据。本试验以1年生樟树幼苗为试验材料,选择氯化铵(NH_4Cl)作为氮肥模拟大气氮沉降,以二水合磷酸二氢钠(NaH_2PO_4·2H_2O)模拟磷添加。氮磷处理设置CK、施N、施P和施N+P 4个水平,种植密度设置10、20、40和80株·m~(-2 )4个水平。实验数据表明:N、P和N+P处理对樟树幼苗的苗高和地径均有促进作用,且N+P处理对幼苗生长的促进效果最好。N、P和N+P处理在整体上均能增加幼苗叶片的SPAD值,N和N+P处理均增加了幼苗叶片的比叶面积(SLA),而P处理减少了幼苗的SLA。随着种植密度的增大,N、P和N+P处理下樟树平均单株幼苗的苗高、地径、SPAD值呈现下降的趋势,各施肥处理下叶片的SLA变化规律不明显。密度和氮磷添加对叶片的SPAD值产生显著的交互作用。     

全球森林土壤微生物生物量碳氮磷化学计量的季节动态

土壤微生物生物量在森林生态系统中充当具有生物活性的养分积累和储存库。土壤微生物转化有机质为植物提供可利用养分, 与植物的相互作用维系着陆地生态系统的生态功能。同时, 土壤微生物也与植物争夺营养元素, 在季节交替过程和植物的生长周期中呈现出复杂的互利-竞争关系。综合全球数据对温带、亚热带和热带森林土壤微生物生物量碳(C)、氮(N)、磷(P)含量及其化学计量比值的季节动态进行分析, 发现温带和亚热带森林的土壤微生物生物量C、N、P含量均呈现夏季低、冬季高的格局。热带森林四季的土壤微生物生物量C、N、P含量都低于温带和亚热带森林, 且热带森林土壤微生物生物量C含量、N含量在秋季相对最低, 土壤微生物生物量P含量四季都相对恒定。温带森林的土壤微生物生物量C:N在春季显著高于其他两个森林类型; 热带森林的土壤微生物生物量C:N在秋季显著高于其他2个森林类型。温带森林土壤微生物生物量N:P和C:P在四季都保持相对恒定, 而热带森林土壤微生物生物量N:P和C:P在夏季高于其他3个季节。阔叶树的土壤微生物生物量C含量、N含量、N:P、C:P在四季都显著高于针叶树; 而针叶树的土壤微生物生物量P含量在四季都显著高于阔叶树。在春季和冬季时, 土壤微生物生物量C:N在阔叶树和针叶树之间都没有显著差异; 但是在夏季和秋季, 针叶树的土壤微生物生物量C:N显著高于阔叶树。对于土壤微生物生物量的变化来说, 森林类型是主要的显著影响因子, 季节不是显著影响因子, 暗示土壤微生物生物量的季节波动是随着植物其内在固有的周期变化而变化。植物和土壤微生物密切作用表现出来的对养分的不同步吸收是保留养分和维持生态功能的一种权衡机制。     

蓝氏贾第虫无义mRNA的降解

无义介导的mRNA降解途径（nonsense-mediated mRNA decay,NMD）作为细胞内的一种重要的mRNA质量监控机制,可以降解含有提前终止密码子（premature termination codon,PTC）的异常转录本,从而避免截短蛋白质对细胞的毒害,但其详细的分子机制有待进一步阐释。蓝氏贾第虫（Giardia lamblia)作为一种寄生性单细胞原生动物,进化地位特殊,对其NMD途径的研究有利于阐明基因表达调控的分子和进化机制。本研究通过酵母双杂交及体外pull-down实验分析了贾第虫NMD途径因子上游移码蛋白1(Giardia lamblia up-frameshift 1,GlUPF1)、贾第虫RNA结合蛋白（Giardia lamblia HRP1, GlHRP1）、贾第虫核糖核酸外切酶（Giardia lamblia Ski7p,GlSki7p、Giardia lamblia XRN1,GlXRN1）之间的相互作用关系。结果表明,GlUPF1全长与GlHRP1、GlXRN1(1~500 aa)、GlSki7p间均可发生相互作用。而且GlUPF1的CH结构域和C端结构域分别与GlHRP1、GlXRN1（1~500 aa）、GlSki7p相互作用。说明GlUPF1在贾第虫NMD途径中作为招募平台,在无义mRNA识别和降解过程中发挥重要作用。为此,结合本实验室之前的研究结果,我们提出原生动物贾第虫的NMD途径：在提前终止密码子处SURF(SMG1-UPF1-eRF1-eRF3)复合物形成后,GlUPF1被磷脂酰肌醇3-激酶(suppressor with morphogenetic effect on genitalia 1,SMG1)磷酸化修饰, NMD途径激活,随后GlUPF1与HRP1相互作用,将转录本标记为NMD底物;GlUPF1进而招募下游贾第虫5′-3′核糖核酸降解酶GlXRN1、贾第虫3′-5′ 核糖核酸降解因子GlSki7p,最终降解靶标mRNA。     

TP53BP1 regulates chromosome alignment and spindle bipolarity in mouse oocytes

Meiotic oocytes lack classic centrosomes; therefore, bipolar spindle assembly depends on the clustering of acentriolar microtubule‐organizing centers (MTOCs) into two poles. The bipolar spindle is an essential cellular component that ensures accurate chromosome segregation during anaphase. If the spindle does not form properly, it can result in aneuploidy or cell death. However, the molecular mechanism by which the bipolar spindle is established is not yet fully understood. Tumor suppressor p53‐binding protein 1 (TP53BP1) is known to mediate the DNA damage response. Several recent studies have indicated that TP53BP1 has noncanonical roles in processes, such as spindle formation; however, the role of TP53BP1 in oocyte meiosis is currently unclear. Our results show that TP53BP1 knockdown affects spindle bipolarity and chromatin alignment by altering MTOC stability during oocyte maturation. TP53BP1 was localized in the cytoplasm and displayed an irregular cloud pattern around the spindle/chromosome region. TP53BP1 was also required for the correct localization of MTOCs into the two spindle poles during pro‐meiosis I. TP53BP1 deletion altered the MTOC‐localized Aurora Kinase A. TP53BP1 knockdown caused the microtubules to detach from the kinetochores and increased the rate of aneuploidy. Taken together, our data show that TP53BP1 plays crucial roles in chromosome stability and spindle bipolarity during meiotic maturation.